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102 lines
3.4 KiB
102 lines
3.4 KiB
7 years ago
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[](https://cran.r-project.org/package=cdcfluview)
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[](https://travis-ci.org/hrbrmstr/cdcfluview)
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[](https://codecov.io/github/hrbrmstr/cdcfluview?branch=master)
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I M P O R T A N T
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=================
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The CDC migrated to a new non-Flash portal and back-end APIs changed.
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This is a complete reimagining of the package and — as such — all your
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code is going to break. Please use GitHub issues to identify previous
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API functionality you would like ported over. There’s a [release
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candidate for
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0.5.2](https://github.com/hrbrmstr/cdcfluview/releases/tag/v0.5.2) which
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uses the old API but it likely to break in the near future given the
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changes to the hidden API. You can do what with
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`devtools::install_github("hrbrmstr/cdcfluview", ref="58c172b")`.
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All folks providing feedback, code or suggestions will be added to the
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DESCRIPTION file. Please include how you would prefer to be cited in any
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issues you file.
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If there’s a particular data set from
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<https://www.cdc.gov/flu/weekly/fluviewinteractive.htm> that you want
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and that isn’t in the package, please file it as an issue and be as
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specific as you can (screen shot if possible).
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:mask: cdcfluview
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=================
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Retrieve U.S. Flu Season Data from the CDC FluView Portal
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Description
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-----------
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The U.S. Centers for Disease Control (CDC) maintains a portal
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<http://gis.cdc.gov/grasp/fluview/fluportaldashboard.html> for accessing
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state, regional and national influenza statistics as well as Mortality
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Surveillance Data. The Flash interface makes it difficult and
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time-consuming to select and retrieve influenza data. This package
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provides functions to access the data provided by the portal’s
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underlying API.
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What’s Inside The Tin
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---------------------
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The following functions are implemented:
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- `agd_ipt`: Age Group Distribution of Influenza Positive Tests
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Reported by Public Health Laboratories
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- `cdcfluview`: Tools to Work with the ‘CDC’ ‘FluView’ ‘API’
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- `cdc_coverage_map`: Retrieve CDC U.S. Coverage Map
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- `geographic_spread`: State and Territorial Epidemiologists Reports
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of Geographic Spread of Influenza
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- `hospitalizations`: Laboratory-Confirmed Influenza Hospitalizations
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- `ilinet`: Retrieve ILINet Surveillance Data
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- `ili_weekly_activity_indicators`: Retrieve weekly state-level ILI
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indicators per-state for a given season
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- `pi_mortality`: Pneumonia and Influenza Mortality Surveillance
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- `state_data_providers`: Retrieve metadat about U.S. State CDC
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Provider Data
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- `surveillance_areas`: Retrieve a list of valid sub-regions for each
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surveillance area.
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- `who_nrevss`: Retrieve WHO/NREVSS Surveillance Data
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The following data sets are included:
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- `hhs_regions` HHS Region Table (a data frame with 59 rows and 4
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variables)
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- `census_regions` Census Region Table (a data frame with 51 rows and
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2 variables)
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Installation
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------------
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``` r
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devtools::install_github("hrbrmstr/cdcfluview")
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```
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Usage
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-----
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``` r
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library(cdcfluview)
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# current verison
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packageVersion("cdcfluview")
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```
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## [1] '0.7.0'
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### EXAMPLES COMING SOON
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Code of Conduct
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---------------
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Please note that this project is released with a [Contributor Code of
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Conduct](CONDUCT.md). By participating in this project you agree to
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abide by its terms.
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